Sun 9 Mar 2008
DNA Fabrication One Strand at a Time
Posted by Jeff under Chemistry, Engineering, Physics
1 Comment
When in 1990 IBM arranged 35 individual xenon atoms to spell out “IBM,” the feat heralded a new era of nanofabrication. And it was so totally cool. But there’s not much you can really do with xenon atoms, and the process had to be performed under a near vacuum at close to absolute zero. A new technique that is much more flexible was recently reported by a group in Munich.
The Munich team manipulated individual DNA molecules into position using an atomic force microscope as a cantilever. The process was performed at room temperature and in solution, making it relatively accessible to a wide range of labs. But the quantum leap forward achieved by using DNA is that it can be readily functionalized. For example, the Munich group attached both a fluorophore and a biotin group to their DNA. Furthermore, DNA can act as a template or “seed” for self assembly of larger structures, such as those demonstrated using DNA staples to create nanoscale shapes and patterns. The Munich team attached a piece of DNA to the microscope tip and picked up from a “depot” pieces of DNA with complementary stretches to the tip-bound DNA. The cantilever then moved the DNA to the assembly area. The assembly area had an anchored DNA molecule that also was partially complementary to the moved piece of DNA, so the moved piece could be immobilized at the destination. The tip-bound piece of DNA was re-used thousands of times without loss of fidelity. I’ve actually oversimplified the binding/unbinding process a bit, and in actuality the group makes ingenious use of the orientation of hybridized DNA molecules to take advantage of either “shear” or “zipper” binding/unbinding geometries to aid their efforts. You can find more details about that in their Science article.
While it’s unlikely that you will be buying any mass-produced products manufactured with these new techniques, the ability for researchers to construct objects to exact specifications may greatly aid materials and life-science research.


